PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020155001 | ||||||||
Common Name | VIT_01s0026g00850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 27640.8 Da PI: 7.8614 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H GSVIVT01020155001 84 FECQYCFKEFANSQALGGHQNAH 106 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 79 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.63E-6 | 81 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEKDGSSLLS PISDGEHGDS AGTSVEKKLR LFGFELDPYK KGESCLKESV ERDESVNSSN 60 TDSSGREKPS IEKNSTVEPE DKKFECQYCF KEFANSQALG GHQNAHKKER MKKKRLQLQA 120 RKASINHYLQ PLQNNHSFTY HGSALWFYDP SCQSPDDESQ ISFTPFDQDA HLKKSQFSKW 180 YAPPANLPLQ QDTCMFTLTH PDGSGQNKPA IIKPSPLPVS KQNCKSLDLQ LGLSVQPNIR 240 SSSRSGI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.8392 | 0.0 | cell culture| pedicel |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM447239 | 0.0 | AM447239.1 Vitis vinifera contig VV78X242690.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003631292.2 | 0.0 | PREDICTED: zinc finger protein 5 isoform X2 | ||||
Refseq | XP_010652954.1 | 0.0 | PREDICTED: zinc finger protein 5 isoform X1 | ||||
TrEMBL | D7TNK9 | 0.0 | D7TNK9_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0026g00850.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10209 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 5e-16 | zinc finger protein 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020155001 |