PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019659001
Common NameVIT_02s0025g02610
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 307aa    MW: 34366.4 Da    PI: 7.5017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019659001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12158203454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  GSVIVT01019659001 158 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLADAVSYIHEL 203
                        699***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-25395IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.964154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-17155219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-13157207No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16158217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10158203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDGDVATWEW YYMVSVTKSF VVGDGVLGRV FSSGAFVWLT DRELQCYDCE RVTEARMNGI  60
RTLLCVSTSC GVLELGSLDM IKEDWGLVLL AKSLFGSKPS TQQQKDHDKK DAGTTVGRSS  120
SDSGHSDSDE PFASALTENI RPKKRGRKPA TGREMPLNHV EAERQRREKL NHRFYALRAV  180
VPNVSRMDKA SLLADAVSYI HELKTKIDDL ETKLREEVRK PKAYGAIRME VDVKIIGSEA  240
MIRVQCPDLN YPSAILMDAL RDLDLRVLHA SVSSVKELML QDVVVRIPEG LTSEESMRTA  300
ILKRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27152213263Transcription factor MYC2
5gnj_B2e-27152213263Transcription factor MYC2
5gnj_E2e-27152213263Transcription factor MYC2
5gnj_F2e-27152213263Transcription factor MYC2
5gnj_G2e-27152213263Transcription factor MYC2
5gnj_I2e-27152213263Transcription factor MYC2
5gnj_M2e-27152213263Transcription factor MYC2
5gnj_N2e-27152213263Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in trichomes and at lower levels in leaves and flowers (PubMed:24884371). Expressed at low levels in roots, stems, leaves, flowers and fruits (PubMed:15231736). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4509420.0AM450942.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X235304.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279973.10.0PREDICTED: transcription factor MYC4
SwissprotA0A060KY903e-56MYC1_SOLLC; Transcription factor MYC1
TrEMBLF6HU750.0F6HU75_VITVI; Uncharacterized protein
STRINGVIT_02s0025g02610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-57bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]