PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019511001 | ||||||||
Common Name | LOC100253577, VIT_02s0025g01280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 343aa MW: 38561.9 Da PI: 6.5026 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.1e-30 | 133 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++eitY+g+H+++ GSVIVT01019511001 133 DDGYNWRKYGQKDILGAKYPRSYYRCTYRnlhDCWATKQVQRSDEDPSMFEITYRGKHTCT 193 8***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-29 | 123 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.7 | 127 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-26 | 131 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-40 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-27 | 133 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDTGLKWQQK TLVNELTQGM ELAKQLKIHL SPSSMSQTQE FLVHKIVASF EKALLIVKWS 60 GPVENPQPVA PSSAPQSPLS VNGSPRTVSE DFDKGCKDHH QEHKDFSKKR KTLPTWTDQV 120 RVCSETGLEG PHDDGYNWRK YGQKDILGAK YPRSYYRCTY RNLHDCWATK QVQRSDEDPS 180 MFEITYRGKH TCTQGSHSVP APASPEKQEI KQNHHNDNNH QQQHYIENPL NYSSMASTSY 240 GCMKSETSLF PQPSAFNKDN YDNLLGCYSP TFISPATSDS NCFSLSPCQM SNFGGPPNLQ 300 HSESELTEII SAANSPILNL EFPLDQVDFD PSFPFNTPGF FS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-19 | 134 | 190 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 9e-19 | 134 | 190 | 18 | 74 | Disease resistance protein RRS1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.4149 | 0.0 | bud| flower| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM424499 | 0.0 | AM424499.2 Vitis vinifera contig VV78X121610.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272720.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | D7TVE1 | 0.0 | D7TVE1_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g01280.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 8e-61 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019511001 |
Entrez Gene | 100253577 |