PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019399001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 446aa    MW: 49614.6 Da    PI: 7.404
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019399001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.4e-092673041954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  GSVIVT01019399001 267 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 304
                        564459******************************88 PP
2BELL120.19.9e-39129199272
               BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +elqk+k+kLls+leeVd+rYk+y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi
  GSVIVT01019399001 129 LMELQKRKSKLLSMLEEVDRRYKHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 199
                        589******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.2E-6265197IPR006563POX domain
PfamPF075262.7E-4871195IPR006563POX domain
PROSITE profilePS5007112.179245308IPR001356Homeobox domain
CDDcd000861.86E-11248309No hitNo description
SMARTSM003895.8E-9248312IPR001356Homeobox domain
SuperFamilySSF466893.38E-17249314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-28251314IPR009057Homeodomain-like
PfamPF059205.4E-18265304IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MVDDSSLRCV FPCEGNERPS QGLSLSLSSS NPSSIGLQSF ELRHTHHQEQ QMMQDGFLGK  60
AANLNQGNFQ LRNSKYLGPA QQLLNECCNL GTKQIDPPRQ KAPKTNQWED ENGSSSSCSR  120
KPSLYSLELM ELQKRKSKLL SMLEEVDRRY KHYCDQMKAV VSSFEAVAGN GAARVYSALA  180
SKAMSRHFRC LRDGIVGQIQ ATKKAMGEKD PVAPGTTRGE TPRLRVLDQA LRQQRAFQQM  240
SMMESHPWRP QRGLPERSVS VLRAWLFEHF LHPYPSDVDK HILARQTGLS RSQVSNWFIN  300
ARVRLWKPMV EEMYLEETKE QDNLGSPDGA TDPDDNGRPN PNPQPPVELD FSSYNHHTAG  360
AVSFTNDSAH HNFGGSGVSL TLGLQQHGGS GVSLAFSPAS QSSLFYSRDP IEDCQPVQYS  420
LLDGEGQNLP YRNLMGAQLL HDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15254312563Homeobox protein Meis2
4xrm_B2e-15254312563Homeobox protein Meis2
4xrs_A1e-15254311158Homeobox protein Meis1
4xrs_B1e-15254311158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13540.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4537590.0AM453759.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X249169.42, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279230.20.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388971e-142BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLF6HUM60.0F6HUM6_VITVI; Uncharacterized protein
STRINGVIT_02s0025g00200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-134TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]