PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019119001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 305aa    MW: 33715.4 Da    PI: 9.2429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019119001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85.1e-101333727
                       SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                       +++++tGtCk+G++CkF+H++
  GSVIVT01019119001 13 HYYLKTGTCKFGATCKFHHPR 33
                       59*****************96 PP
2zf-CCCH37.92.9e-125779527
                       --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                        C +++rtG+Ck+G++CkF+H++
  GSVIVT01019119001 57 DCAYYLRTGQCKFGSTCKFHHPQ 79
                       7********************97 PP
3zf-CCCH38.51.9e-12193219127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+f+++tG Ck+G+ C+F+H++
  GSVIVT01019119001 193 PGQPECQFYMKTGDCKFGAVCRFHHPR 219
                        5789*********************96 PP
4zf-CCCH40.83.7e-13239265127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++lC f++r+G+Ck+G++CkF H++
  GSVIVT01019119001 239 PGEPLCIFYSRYGICKFGPSCKFDHPM 265
                        589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.601634IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033633IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5835IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-41033IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-71333IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-55279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1785280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-65680IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-105779IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-45878IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596192220IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9194219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6196222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5198220IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709238266IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10240265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5241265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4243263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSYAVKNVDL CFHYYLKTGT CKFGATCKFH HPRDKAGIAG RVSLNILGYP LRPDEIDCAY  60
YLRTGQCKFG STCKFHHPQP SSMMVSLRGI TNWPLSRASF IPSPRWQAPS SYAPLMLPQG  120
VVSVPGWNAY SGQLGSPSES QQQTGGNNQI YGTSRQSEQP NTGSQGTFSP YRSGSVPIGF  180
YALQRENVFP ERPGQPECQF YMKTGDCKFG AVCRFHHPRE RLIPTPDCVL SPIGLPLRPG  240
EPLCIFYSRY GICKFGPSCK FDHPMGIFAY NLSASSSADA PVVRRLLHKA QATFTARDKT  300
DASW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.90250.0bud| fruit| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3829850.0FQ382985.1 Vitis vinifera clone SS0ABG36YH09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278934.20.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-155ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLF6GX270.0F6GX27_VITVI; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-132zinc finger protein 1