PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019118001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 112aa MW: 12572.4 Da PI: 5.85 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.3 | 9.4e-12 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G +C+F+H+p GSVIVT01019118001 49 PGEPDCSYYIRTGLCRFGITCRFNHPP 75 5799*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.0E-5 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-8 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 54 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MEFDAGIPMP RGQVTEGSSL SPSLNQDAMW QMNLRSSETM ESGPYPERPG EPDCSYYIRT 60 GLCRFGITCR FNHPPNRKLA IATARMKGEF PERMGQPECQ ACVLFFIFFP L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.9025 | 1e-155 | bud| fruit| pedicel |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM424564 | 3e-84 | AM424564.2 Vitis vinifera contig VV78X120340.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278934.2 | 6e-66 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q8GXX7 | 5e-47 | C3H33_ARATH; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | F6GX27 | 1e-64 | F6GX27_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0023g00370.t01 | 2e-65 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 2e-49 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019118001 |
Publications ? help Back to Top | |||
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