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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01018975001 |
| Common Name | VIT_04s0023g01660 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
GRAS |
| Protein Properties |
Length: 585aa MW: 64056 Da PI: 4.9063 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01018975001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 325.7 | 9.2e-100 | 221 | 545 | 3 | 334 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
++Ll+cA+ +++++ +a + L rl+e +s++gdp++R+a+yf eAL +r+++ + k + ets s+e + ++k++++++P+ kf+
GSVIVT01018975001 221 KALLDCAR-LADSEPDRAVKSLIRLRESVSEHGDPTERVAFYFSEALYSRVSH---QAEKRPTLFETS---SEEFTLSYKALNDACPYSKFA 305
79******.566688999999*******************************9...444444444444...899999*************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g + +l +tg+rL++fA+ l+++fef++ +
GSVIVT01018975001 306 HLTANQAILEATERARKIHIVDFGIVQGVQWAALLQALATRSAGKPaRIRISGIPAPALGksPASSLFATGNRLRDFARLLDLNFEFEP-IL 396
******************************************66555*********999988999************************.79 PP
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
+ +++l+ +++rv+p+E+laVn++lql++llde+ + + + L+l ksl+Pk++++ e ea +n+ +F +rf +al+yy a+fdsle +l
GSVIVT01018975001 397 TPIQELNESTFRVDPDEVLAVNFMLQLYNLLDETPVSVN---AALRLAKSLNPKIMTLGEYEACLNEVDFINRFKNALRYYRAIFDSLEPNL 485
9******************************99988888...9************************************************* PP
GRAS 276 preseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaa 334
+r+s++r vEr llgr+i v+ e+ rrer+e +ekW+ +e++GF++vpls++a
GSVIVT01018975001 486 ARDSSDRLQVERLLLGRRIAGVIGPEEPGtRRERMEDKEKWKFLVESCGFESVPLSHYAS 545
************************998877**************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 585 aa
Download sequence Send
to blast |
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQQQQLGGVN SFCLNPWTTT PHTMSTAPAL 60
GYGLAGAGFS DPFQVAGTAD AGEGGFQFAH LEHHSTGFRF SDFSGGGGGE FDSDEWMDSL 120
MGGGDSTESS NLPSGCDAWQ NDADLTLYGA DPFTSCPSRL SIASSPTSDL NRVIFSDAQK 180
CTNPPLQPQP ANPPPAHLQK NDVAGVSSGS PEAESAPPIL KALLDCARLA DSEPDRAVKS 240
LIRLRESVSE HGDPTERVAF YFSEALYSRV SHQAEKRPTL FETSSEEFTL SYKALNDACP 300
YSKFAHLTAN QAILEATERA RKIHIVDFGI VQGVQWAALL QALATRSAGK PARIRISGIP 360
APALGKSPAS SLFATGNRLR DFARLLDLNF EFEPILTPIQ ELNESTFRVD PDEVLAVNFM 420
LQLYNLLDET PVSVNAALRL AKSLNPKIMT LGEYEACLNE VDFINRFKNA LRYYRAIFDS 480
LEPNLARDSS DRLQVERLLL GRRIAGVIGP EEPGTRRERM EDKEKWKFLV ESCGFESVPL 540
SHYASIDEAW KEVTNRFPPL SKTQGASAVH DKVANGLIFL FLFC*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM458867 | 0.0 | AM458867.2 Vitis vinifera contig VV78X134043.50, whole genome shotgun sequence. |
