PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01018833001 | ||||||||
Common Name | LOC100262474, VIT_04s0023g02880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 306aa MW: 33078.6 Da PI: 4.8246 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58 | 1.3e-18 | 224 | 258 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l GSVIVT01018833001 224 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 258 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.4E-85 | 4 | 299 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.358 | 218 | 254 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.19E-14 | 218 | 280 | No hit | No description |
SMART | SM00401 | 2.0E-15 | 218 | 272 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 222 | 256 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.32E-14 | 223 | 271 | No hit | No description |
Pfam | PF00320 | 1.6E-16 | 224 | 258 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 224 | 249 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MECVEKALKS SVVRPELAFK LTQQPACMDD MCMGNGQSGV SGDDFSIDDL LDFTNGGIGE 60 GLFQEEDEED EDKGCGSLSP RGELTENDNS NLTTTTFSVK DEFPSVPATE LTVPADDLAD 120 LEWLSHFVED SFSEYSAPFP HGTLTEKAQN QTENPPEPET PLQIKSCLKT PFPAKARSKR 180 ARTGGRVWSM GSPSLTESSS SSSSSSSSLD PEASGSAQPT PHRCSHCGVQ KTPQWRTGPL 240 GAKTLCNACG VRYKSGRLLP EYRPACSPTF SSEIHSNHHR KVLEMRRKKE VTRPESGLAP 300 AVPSF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1974 | 0.0 | fruit| inflorescence| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM475587 | 0.0 | AM475587.2 Vitis vinifera contig VV78X103852.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272762.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 6e-79 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | F6GWQ6 | 0.0 | F6GWQ6_VITVI; GATA transcription factor | ||||
STRING | VIT_04s0023g02880.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 1e-53 | GATA transcription factor 7 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01018833001 |
Entrez Gene | 100262474 |