PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01018486001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

LBD

Protein Properties

Length: 224aa MW: 24587.4 Da PI: 7.8304

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01018486001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.1	6.3e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk++rrkC+++C++apyfp +qp+kfanvhk+FGasnv kll++++ +reda++sl+yeAear++dPvyG+vg+i+ lqqql++l++ GSVIVT01018486001 7 PCAACKLQRRKCTQECIYAPYFPPDQPQKFANVHKVFGASNVAKLLNEINAANREDAVNSLAYEAEARLHDPVYGCVGMISILQQQLKHLQN 98 7******************************************************************************************* PP DUF260 93 elallkee 100 +l ++k+e GSVIVT01018486001 99 DLLAAKKE 106 *9998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.436	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-42	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSSSNSPCAA CKLQRRKCTQ ECIYAPYFPP DQPQKFANVH KVFGASNVAK LLNEINAANR 60 EDAVNSLAYE AEARLHDPVY GCVGMISILQ QQLKHLQNDL LAAKKELAAY IGPSAMAHVG 120 YMPQQYMSDP SSSSVIPYNM SPILGLPPGA PHGGQLIIHF AFLNCSDPMH LILYRRITVG 180 YWQLPSLHFH CGQGPFISAL THKVGKDAMI MVFEAAYFFG ETL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-48	4	123	8	123	LOB family transfactor Ramosa2.1
5ly0_B	7e-48	4	123	8	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM487405	0.0	AM487405.1 Vitis vinifera contig VV78X136265.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010662454.1	1e-112	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FKZ3	3e-61	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	F6HAJ3	1e-111	F6HAJ3_VITVI; Uncharacterized protein
STRING	VIT_16s0022g02050.t01	1e-112	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-63	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	GSVIVT01018486001

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]