PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018450001
Common NameLOC100256085, VIT_16s0022g02330
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28414.5 Da    PI: 8.2161
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018450001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.4e-311058250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       rienk+nrqvtfskRrng+lKKA+ELSvLCdaev++iifss+gkl+e+ 
  GSVIVT01018450001 10 RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVCLIIFSSRGKLFEFG 58
                       9**********************************************95 PP
2K-box843.2e-28781726100
              K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        +++ +e++ +  ++e++kLk+++e+L  +qRhllGedL+ Ls+keLq+Le+ Le  l++ R++K +++l+q++el+kke++l+e nk+L++k
  GSVIVT01018450001  78 DNNDAEHDRQIGHEEYSKLKAKYESLMDSQRHLLGEDLGLLSIKELQNLEKMLEGTLSQARQRKAQMMLKQMDELKKKEHDLEEMNKQLTSK 169
                        3445677788899******************************************************************************* PP

              K-box  98 lee 100
                        lee
  GSVIVT01018450001 170 LEE 172
                        987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.609161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.75E-42278No hitNo description
SuperFamilySSF554552.62E-33284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2483170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.53686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVVLQR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVCLIIFSS RGKLFEFGSS  60
GMTKTIERYR RCCYASRDNN DAEHDRQIGH EEYSKLKAKY ESLMDSQRHL LGEDLGLLSI  120
KELQNLEKML EGTLSQARQR KAQMMLKQMD ELKKKEHDLE EMNKQLTSKL EELEECVRVI  180
EASWDSGTVA GNDSLNMHIS QPNQIQPQPQ PQPQPSLPMG FHEFVPPEGA AIARNVGNAR  240
NGLAQGWLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21181183MEF2 CHIMERA
6byy_B2e-21181183MEF2 CHIMERA
6byy_C2e-21181183MEF2 CHIMERA
6byy_D2e-21181183MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4252252e-96AM425225.2 Vitis vinifera contig VV78X043668.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263143.10.0PREDICTED: MADS-box transcription factor 6 isoform X1
SwissprotQ8LLR11e-102MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLD7T1T80.0D7T1T8_VITVI; Uncharacterized protein
STRINGVIT_16s0022g02330.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-72AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]