PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017774001
Common NameLOC100257896, VIT_05s0020g01650
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 479aa    MW: 50542.6 Da    PI: 7.898
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017774001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-125176227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       +++ C ++++tG+C yG+rC+F+H++
  GSVIVT01017774001 51 DEADCIYYLKTGFCGYGARCRFNHPR 76
                       6799********************96 PP
2zf-CCCH38.91.5e-1298122327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C+f+++tGtCk+G++Ck++H++
  GSVIVT01017774001  98 QPVCQFYMKTGTCKFGASCKYHHPR 122
                        689********************96 PP
3zf-CCCH34.92.5e-11143168227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++ +tG Ck+G++CkF+H++
  GSVIVT01017774001 143 GEKECSYYVKTGLCKFGETCKFHHPQ 168
                        7899********************97 PP
4zf-CCCH39.78.4e-13304330127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++++rtG Ck+G++Ck++H+p
  GSVIVT01017774001 304 PGQPECQYYMRTGDCKFGSSCKYHHPP 330
                        5789*********************97 PP
5zf-CCCH32.21.9e-10353376427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        + C ++a+ G+Ck+G++CkF H++
  GSVIVT01017774001 353 PQCTHYAQRGICKFGPTCKFDHPM 376
                        77********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.074977IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-95176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.02395123IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-698123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812141169IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5141168IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7143170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5147168IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-7303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.277303331IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6307330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4309330IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5349376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042349377IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-8353376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5353379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4355374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDRYGRAPAM EGSPSDPSQE WTGPVAETGL EEPLWQLGLG GGGEAYPERP DEADCIYYLK  60
TGFCGYGARC RFNHPRDRGG VGGTVRPGGG EFPERVGQPV CQFYMKTGTC KFGASCKYHH  120
PRQGGGTVSP VTLNYFGYPL RPGEKECSYY VKTGLCKFGE TCKFHHPQPD SIQLSTPGPA  180
ALPAPVPAHT LYPTVQSPSV PSSQQYGLVV ARPPLLPSSY FHGPYSPVLI PPGMVPFPGW  240
SHYPAPVSPV ASPSTQPTVG SGQMYGLTPL SPSAPAYTGP YTPLPSSVGP SSSSQKEQIF  300
PERPGQPECQ YYMRTGDCKF GSSCKYHHPP EWDTPKTNCV LSPMGLPLRP GAPQCTHYAQ  360
RGICKFGPTC KFDHPMGTLS YSPSASSLAD MPVAPYPVGS SMGTLAPSSS SSDLRPELIS  420
GSSKESLSTR MSSSMSTSSG SVGSIFSKSG PGHSSTQQPV QSSGPSTGSS SSEAHTSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.31180.0fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3846530.0FQ384653.1 Vitis vinifera clone SS0AAG16YF16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276435.10.0PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ84W911e-167C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLD7T6H00.0D7T6H0_VITVI; Uncharacterized protein
STRINGVIT_05s0020g01650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-143C3H family protein