PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016996001
Common NameLOC100241227, VIT_09s0002g03610
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 359aa    MW: 38587.1 Da    PI: 6.6795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016996001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-11113157347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  GSVIVT01016996001 113 PWTEEEHRLFLFGLQRLGKGDWRGISRNYVISRTPTQVASHAQKY 157
                        8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.0E-4222IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.65106162IPR017930Myb domain
SuperFamilySSF466891.35E-16108163IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-18109161IPR006447Myb domain, plants
SMARTSM007176.6E-9110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-10110156IPR009057Homeodomain-like
CDDcd001678.39E-8113158No hitNo description
PfamPF002494.7E-10113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTRRCSHCST NGHNSRTCPS RGGGAVAGGI GGVKLFGVRL TDGSIIKKSA SMGSLSSAHY  60
HSSSSAAASP NPSSPSSDPL RDAIHEPDGY LSDDPGQATC SSNRRGERKK GVPWTEEEHR  120
LFLFGLQRLG KGDWRGISRN YVISRTPTQV ASHAQKYFIR QSNATRRKRR SSLFDMVPDM  180
VTDTPPVPEE QFLVPTSQTG ETDNASSVPS LNLSLNMEFE PMETISQETV KEAEEAEETV  240
IPRSELPPVV PAFFPGYLPV PFPFWPPNAA SAEEEKESES SHQVLKPIPV LPKEPVNVDE  300
LVGMSQLSLG EINNGHIDSS PLSLKLLGAP SRQSAFHTNT SVGGSELGKG KNSVVQAV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.1700.0bud| cell culture| flower| fruit| inflorescence| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3839790.0FQ383979.1 Vitis vinifera clone SS0AAG51YG16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283785.10.0PREDICTED: uncharacterized protein LOC100241227
SwissprotQ7XC571e-102MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLD7U0C10.0D7U0C1_VITVI; Uncharacterized protein
STRINGVIT_09s0002g03610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-90MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]