PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016768001
Common NameVIT_09s0002g01410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 297aa    MW: 33654.5 Da    PI: 8.3847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016768001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W+ +Ede l+++++ +G g+Wk+ a++ g++R++k+c++rw++yl
  GSVIVT01016768001 14 RGAWSMQEDEVLINYIRVHGEGNWKSLAQKSGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
2Myb_DNA-binding55.99.7e-1867111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  GSVIVT01016768001  67 RGSFSPDEEELIIKLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTT 111
                        899*******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.245961IPR017930Myb domain
SuperFamilySSF466892.41E-2911108IPR009057Homeodomain-like
SMARTSM007174.9E-121363IPR001005SANT/Myb domain
PfamPF002495.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-221568IPR009057Homeodomain-like
CDDcd001676.66E-101661No hitNo description
PROSITE profilePS5129425.18462116IPR017930Myb domain
SMARTSM007174.2E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1667111IPR001005SANT/Myb domain
CDDcd001671.25E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009010anatomyseed
PO:0025501developmental stagefruit formation stage
PO:0025502developmental stagefruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRSPSFADV GLIRGAWSMQ EDEVLINYIR VHGEGNWKSL AQKSGLKRCG KSCRLRWLNY  60
LRPGLKRGSF SPDEEELIIK LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT TLCKRLRGDQ  120
KIEKKPVDNS ATLDSPQPIR TKAFRCQRVI ISTHKEESHL MNKDSDFISE TGHLPSTSTS  180
TLLHDSSINF LIDSYDVPAA LDPYFLQIPS YKMQENAISS SFSDCYLSED ELLVQNRISY  240
EPPQLTWALE LKKNFCLSVG ASFRVLLPLH CPVVSTNFQE YAEKGSLREL VCAAMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4518180.0AM451818.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X087069.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274017.10.0PREDICTED: transcription factor MYB82
TrEMBLD7TZT50.0D7TZT5_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-56MYB family protein