PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016767001 | ||||||||
Common Name | VIT_09s0002g01400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 37050.8 Da PI: 6.7802 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g W+ +++ g++R++k+c++rw++yl GSVIVT01016767001 14 RGAWTATEDKILTEYIKVHGEGKWRNLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ GSVIVT01016767001 67 RGNITHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.8 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.49E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.189 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGRSPCCAKE GLNRGAWTAT EDKILTEYIK VHGEGKWRNL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI THDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKISSTP 120 NHRPRIQSEE RPNSTSISPR PSLNNGPPPV LHAKPSRCTK VFIATEPPKV DQVIETRPEP 180 DSSPAIGSGN ENDSNPSDFM IDFEMDANFL SEFLNSDFSQ LCDFHDGVEA DSNTNNTSST 240 SQHSSPNATE APLLMNEEET LQNSNLFSLD SFLDCEMDWP NMISNFLFFK IYQRIIRLYM 300 IPFNWNFNIF KFLQICFHDH VEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM439689 | 1e-155 | AM439689.2 Vitis vinifera contig VV78X249627.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275148.1 | 0.0 | PREDICTED: myb-related protein Zm38 | ||||
TrEMBL | F6HXX8 | 0.0 | F6HXX8_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g01400.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-63 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016767001 |