PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01016333001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

LBD

Protein Properties

Length: 280aa MW: 30856.3 Da PI: 7.0022

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01016333001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.1	1.7e-39	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C++ Cvlapyfp ++p +f ++h++FGasn++k +++lpe++r da+ss++yeA++r+ dPvyG++g i++l++ql+ l++ GSVIVT01016333001 31 PCAACKILRRRCTDRCVLAPYFPPTEPFNFIIAHRVFGASNIIKSVQDLPESRRADAVSSMIYEANVRMCDPVYGCAGAISQLHKQLCDLQT 122 7***************************************************************************************** PP DUF260 93 elallkee 100 ela++++e GSVIVT01016333001 123 ELAATQAE 130 **9987 PP
2	DUF260	131.5	3.5e-41	146	245	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C++ Cvlapyfp ++p kf ++hk+FGasn++k l++lpe++r da+ss+vyeA ar rdPvyG++g i++lq+ql+ l+a GSVIVT01016333001 146 PCAACKILRRRCTERCVLAPYFPPTEPLKFVIAHKVFGASNIVKALQELPESKRADAVSSMVYEAYARNRDPVYGCAGAISHLQKQLNDLQA 237 7***************************************************************************************** PP DUF260 93 elallkee 100 ela++++ GSVIVT01016333001 238 ELAMTQAA 245 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.906	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.7E-39	31	128	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	25.473	145	246	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-41	146	243	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEYTDPTTTG STIPSSSSSL APSLPTAVQR PCAACKILRR RCTDRCVLAP YFPPTEPFNF 60 IIAHRVFGAS NIIKSVQDLP ESRRADAVSS MIYEANVRMC DPVYGCAGAI SQLHKQLCDL 120 QTELAATQAE LAIVQCQQQQ LNESGPCAAC KILRRRCTER CVLAPYFPPT EPLKFVIAHK 180 VFGASNIVKA LQELPESKRA DAVSSMVYEA YARNRDPVYG CAGAISHLQK QLNDLQAELA 240 MTQAALLLIQ CQQHEQNHEN TAIFDQDKYF SSVLEPSWQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	21	253	2	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	21	253	2	118	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM455510	1e-147	AM455510.1 Vitis vinifera contig VV78X165644.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010658439.1	9e-97	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9SK08	2e-53	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2H5NZ65	1e-103	A0A2H5NZ65_CITUN; Uncharacterized protein
STRING	VIT_13s0019g03750.t01	3e-96	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-55	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	GSVIVT01016333001