PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016330001 | ||||||||
Common Name | LOC100256462, VIT_13s0019g03780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19074.6 Da PI: 8.5972 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.2 | 5e-42 | 47 | 146 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCkvlrr+C+++C+lapyfp+++p +f +hk+FGasn++k lk++pe++r da+ss+vyeA+ar+ dPvyG++g i+klq+qle+++a GSVIVT01016330001 47 PCAACKVLRRRCTESCILAPYFPSTKPFQFITAHKVFGASNIIKWLKEVPETNRADAVSSMVYEANARILDPVYGCAGAISKLQKQLEEVQA 138 7******************************************************************************************* PP DUF260 93 elallkee 100 ela++++e GSVIVT01016330001 139 ELAMTQAE 146 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.794 | 46 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-41 | 47 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009010 | anatomy | seed | ||||
PO:0025501 | developmental stage | fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEYTEKTTKP LKVFNSIHLF SSSSSSSSSS SSSSSRSSSF PAASQGPCAA CKVLRRRCTE 60 SCILAPYFPS TKPFQFITAH KVFGASNIIK WLKEVPETNR ADAVSSMVYE ANARILDPVY 120 GCAGAISKLQ KQLEEVQAEL AMTQAELLFM RCQQQQLDDN AKFHRNSGSA NWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-40 | 47 | 154 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-40 | 47 | 154 | 11 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM483510 | 1e-150 | AM483510.2 Vitis vinifera contig VV78X174222.12, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010658438.1 | 1e-126 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 9e-51 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | D7TME0 | 1e-125 | D7TME0_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0019g03780.t01 | 1e-126 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 3e-52 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016330001 |
Entrez Gene | 100256462 |