PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01016327001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

LBD

Protein Properties

Length: 299aa MW: 32802.6 Da PI: 7.9931

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01016327001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.9	1e-30	1	84	17	100
DUF260 17 vlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lapyfp+++p +f ++h++FGasn++k+l++lpe++r da++s+vyeA++r+rdPvyG++g i++lq+q++ lkaela++++e GSVIVT01016327001 1 MLAPYFPSSEPLNFIIAHRVFGASNIIKFLQELPESKRADAARSMVYEANMRIRDPVYGCAGAISHLQNQVNGLKAELAMTQAE 84 59*****************************************************************************99987 PP
2	DUF260	130.2	8.8e-41	139	238	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCkvlrr+C+k+C lapyfp ++p kf n+hk++Gasn++k l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq++l+ ++a GSVIVT01016327001 139 PCGACKVLRRRCTKSCLLAPYFPPTEPMKFINAHKIYGASNIVKCLQELPESKRADAVSSMVYEANARIRDPVYGCAGAISHLQKRLNDVQA 230 7***************************************************************************************** PP DUF260 93 elallkee 100 ela++++e GSVIVT01016327001 231 ELAMTQAE 238 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.0E-29	1	82	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	19.099	1	85	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	24.953	138	239	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-40	139	236	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MLAPYFPSSE PLNFIIAHRV FGASNIIKFL QELPESKRAD AARSMVYEAN MRIRDPVYGC 60 AGAISHLQNQ VNGLKAELAM TQAELLIMQS QQQQQTHSAS SPLSLRMEEY NYKTSNTPFS 120 SSSSSRVSPL LSGSAVQGPC GACKVLRRRC TKSCLLAPYF PPTEPMKFIN AHKIYGASNI 180 VKCLQELPES KRADAVSSMV YEANARIRDP VYGCAGAISH LQKRLNDVQA ELAMTQAEIL 240 IMQSQQQQQQ QQQNDNAIQG LHTKSDFPDI AIPLLVIEET ASKKVAIAGL CLIDLTDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-40	1	240	11	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-40	1	240	11	112	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM483363	1e-117	AM483363.2 Vitis vinifera contig VV78X217193.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019079772.1	4e-82	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9LQR0	5e-53	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	F6HNJ3	1e-113	F6HNJ3_VITVI; Uncharacterized protein
STRING	VIT_13s0019g03820.t01	1e-113	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-52	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	GSVIVT01016327001