PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016175001
Common NameLOC100242836, VIT_13s0019g05240
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 560aa    MW: 62299.2 Da    PI: 4.2277
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016175001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.8e-5391361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        l+pGfrFhPtdeelv++yLk+kv gk +++ ++i+e+diyk+ePwdLp + k+k+++ ewyfFs  dkky +g+r+nrat++gyWk+tgkd+
  GSVIVT01016175001   9 LAPGFRFHPTDEELVWYYLKRKVCGKLFRF-DTISEIDIYKSEPWDLPgQsKLKSRDLEWYFFSVLDKKYGNGSRTNRATDRGYWKTTGKDR 99 
                        579************************999.89**************96347777888********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ev + + ++vg+kktLv+++grap+ge+t+Wvmheyrl
  GSVIVT01016175001 100 EVRH-RARTVGMKKTLVYHSGRAPRGERTNWVMHEYRL 136
                        ****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-617159IPR003441NAC domain
PROSITE profilePS5100557.8569159IPR003441NAC domain
PfamPF023652.0E-2711136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGRESAASLA PGFRFHPTDE ELVWYYLKRK VCGKLFRFDT ISEIDIYKSE PWDLPGQSKL  60
KSRDLEWYFF SVLDKKYGNG SRTNRATDRG YWKTTGKDRE VRHRARTVGM KKTLVYHSGR  120
APRGERTNWV MHEYRLMDEE LKKTGVAQDA FVLCRIFQKS GSGPKNGEQY GAPFVEEEWD  180
EDEDVVVFVP GELAAEEVVA GHEPSDEAVD LEKCLDIGLP PENDPLPLNF YYGDCSKYAE  240
DSRVFNENEQ KPFIGMEENH CGSELPNDQK IFDLSEQYEV DAKSVKDEYY VEQSNDVNSV  300
EVDYLLDEPY LDASENLAFE DGFFLETDDL SNPVETDPSG FDIDEYLAFL DADGDNLQQM  360
AFGSFEMMGS ENPLSDLAPL DQEPVNGGAE KLPIGSQQLS EAYGDSGASS SKKNPEATEF  420
ESDIPYPFIK QASYQLLGGI PAPFASASDA PTKDVALRLN SAMQSSSSVH LTAGMIQIRD  480
TTLSGNGVDW SYGKSGNINF MLSFGLPQGE TNSASLEPIA SLMSGKAGPV ISRAGFYLIF  540
IWVLILSVSY KIGTCICSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48416510174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.33070.0bud| cell culture| flower| fruit| inflorescence| leaf| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4668750.0AM466875.2 Vitis vinifera contig VV78X252678.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265345.20.0PREDICTED: NAC domain-containing protein 53
SwissprotQ84K001e-162NAC78_ARATH; NAC domain-containing protein 78
TrEMBLD7TM220.0D7TM22_VITVI; Uncharacterized protein
STRINGVIT_13s0019g05240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1057159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-156NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]