PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016139001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Trihelix | ||||||||
Protein Properties | Length: 153aa MW: 16645.8 Da PI: 10.3339 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.8 | 8.7e-16 | 39 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfe..rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L++++++++ +r+klk+++We++++++ r+ g++ ++p+qCk+k+e+++kry+ + ++ + s+++++ +++ GSVIVT01016139001 39 EWSEGGVTSLLDVYESKWLLRNRAKLKGTDWEDIAQQVsiRDSGMKalKTPNQCKNKIESMKKRYRIESSVNGPG-----SSWQFYGRMD 123 5*************************************99777775227************************86.....4699*99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.2E-20 | 37 | 124 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MESGVAQTPA TATVTAAATA TATAPTVATK NPDKSKRDEW SEGGVTSLLD VYESKWLLRN 60 RAKLKGTDWE DIAQQVSIRD SGMKALKTPN QCKNKIESMK KRYRIESSVN GPGSSWQFYG 120 RMDGLLKGTS VQNRGGDVGF GNGWRLKKKM DD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM453393 | 0.0 | AM453393.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X103689.4, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010655155.1 | 1e-101 | PREDICTED: uncharacterized protein LOC100267221 isoform X2 | ||||
TrEMBL | A0A438BUG8 | 1e-99 | A0A438BUG8_VITVI; Trihelix transcription factor ASIL2 | ||||
STRING | XP_010278037.1 | 1e-51 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4409 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 7e-41 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016139001 |