PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01015574001 | ||||||||
Common Name | VIT_11s0016g05650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 143aa MW: 16088.9 Da PI: 9.22 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.8 | 1.9e-11 | 2 | 30 | 16 | 46 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46 +k+lG++ W++Ia +++ gRt++++k++w++ GSVIVT01015574001 2 HKLLGNR-WSLIAGRLP-GRTDNDVKNYWNT 30 899****.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.804 | 1 | 36 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 1 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.24E-8 | 1 | 32 | No hit | No description |
Pfam | PF00249 | 3.5E-9 | 2 | 30 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-9 | 2 | 35 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MHKLLGNRWS LIAGRLPGRT DNDVKNYWNT RLNKGRSGGK RKSPSSDDNA GHKRRRGLPN 60 SRPNCDGSPE KSSEGSDGRK QEASHNIPDN NPRMEDTKSF NHDIKSPWLP IVEDKAFLFY 120 VEPFISFSDA FVLFETLGEI EC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 55 | KRKSPSSDDNAGHKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM485556 | 0.0 | AM485556.2 Vitis vinifera contig VV78X269058.24, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656503.1 | 1e-101 | PREDICTED: transcription factor MYB82-like | ||||
TrEMBL | A0A438JQD8 | 1e-100 | A0A438JQD8_VITVI; Transcription factor MYB82 | ||||
STRING | VIT_11s0016g05650.t01 | 1e-101 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-21 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01015574001 |