PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01015500001 | ||||||||
Common Name | VIT_11s0016g04940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 249aa MW: 27409.1 Da PI: 9.1444 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.2 | 7.6e-10 | 48 | 71 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H GSVIVT01015500001 48 KMKLCKKFYNGEECPYGDRCNFLH 71 789*******66************ PP | |||||||
2 | zf-CCCH | 40.5 | 4.7e-13 | 134 | 160 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + tG+C++G++C+FaHg+ GSVIVT01015500001 134 WKTKLCCKWETTGHCPFGEKCHFAHGQ 160 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.333 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-7 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-10 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-7 | 48 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-16 | 129 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-10 | 130 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-10 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MNPRIHPPNA PTSRGTSNIF FKTRICAKFK LEERGTKIWD EDQRIIHKMK LCKKFYNGEE 60 CPYGDRCNFL HEDPKKFRDD SARPRESFAI SIGTTGPPME HGSGSNLGSN LSSNLSSMNS 120 GLDPFRGNVK PTYWKTKLCC KWETTGHCPF GEKCHFAHGQ AELQMTGGGG GGGGWAEAEV 180 GNTCSLPAKL PSVPANVSTP PELGTGAPIN PERQNKKLLL QSKGFKKINR IYADWIDDLP 240 SLNNKVKD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430877 | 0.0 | AM430877.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X179571.26, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656406.1 | 1e-154 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_010656407.1 | 1e-154 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_019078758.1 | 1e-154 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 2e-53 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | F6HH72 | 1e-177 | F6HH72_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0016g04940.t01 | 1e-178 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-51 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01015500001 |