PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015465001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 705aa    MW: 78721.9 Da    PI: 6.2968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015465001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS227.66e-70500691180374
               GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         +v++rled+++++L+v+p+Ea+a+n+++qlhrll +  +  s++++vL  ++sl+Pk+v+vveqea+hn+++Fl+rf+eal+yys++fdsl
  GSVIVT01015465001 500 SVVTSRLEDVKPWMLQVSPKEAVAINSIMQLHRLLGSGPTRVSAIETVLGWIRSLNPKIVTVVEQEANHNQSEFLDRFTEALYYYSTMFDSL 591
                        56899*************************************************************************************** PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        ea      + ++ v + ++++ei+nv++ceg++r+erhe l+kWr+rl++aGF+p++l+++a kqa++ll  ++ +gy vee++g+l+lgW+
  GSVIVT01015465001 592 EAC---SLQPEKAVAEIYIQKEICNVLCCEGSARVERHEPLAKWRNRLGAAGFRPLNLGSNAFKQASMLLTLFSAEGYCVEEHDGCLTLGWH 680
                        998...347778888899************************************************************************** PP

               GRAS 364 drpLvsvSaWr 374
                        +rpL+++SaW+
  GSVIVT01015465001 681 SRPLIAASAWQ 691
                        **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813832.62E-63083IPR001810F-box domain
Gene3DG3DSA:1.20.1280.504.1E-53476No hitNo description
PROSITE profilePS5018110.8753480IPR001810F-box domain
PfamPF006462.1E-53778IPR001810F-box domain
SMARTSM002568.2E-54080IPR001810F-box domain
SMARTSM011291.3E-18417489No hitNo description
PfamPF120412.9E-30417482IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098524.205432671IPR005202Transcription factor GRAS
PfamPF035142.1E-67500691IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MTQPSRNHHQ LDLWDKLDCS TIQLCCDMDN HRPTVGFSCL PSELLQSIFL RLALPDIVRL  60
RSINKSIASI VSDKDFVRDC NTQFLSANWL FIYSKGWRRD SVLHGFTDQS DHWFKIPIAG  120
LLMPVIHATE DLYFLAASGN FFLFVSNTRK ELLSVNLMKR TVKKIPPSPL GPRGTSSWRR  180
SGMKLVAGPP GSDSFRFLFA ELVENRPIMF EYNSDDDKWQ SMEAEENHGD LPRVFEGAGP  240
LIFLSVVNGT NESVVLAIGS QGNNTPVVLR PRFSGGAIEQ RQVARVLKEI EMWGLSPNGR  300
RWERISKLPG ATMEQIKRAY GVIMGCVEER NGTIRALLMS NYRGLWHIIW LSYDIGRDDW  360
TLLPLPDFDM KGLNMAGITF SSGLTLHHSH MGPYDSAIST GSTTSSPSSA AKPSDIDGLL  420
AGAGYKVRST ELHQVAQRLE RLETVMVNAP SEISQLASDV LHCNPSDIAS WVDSMLFEFN  480
PPVSIPSDLS DFSDLTYIDS VVTSRLEDVK PWMLQVSPKE AVAINSIMQL HRLLGSGPTR  540
VSAIETVLGW IRSLNPKIVT VVEQEANHNQ SEFLDRFTEA LYYYSTMFDS LEACSLQPEK  600
AVAEIYIQKE ICNVLCCEGS ARVERHEPLA KWRNRLGAAG FRPLNLGSNA FKQASMLLTL  660
FSAEGYCVEE HDGCLTLGWH SRPLIAASAW QPLLDTVINH NNLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-26489692179380Protein SCARECROW
5b3h_A3e-26489692178379Protein SCARECROW
5b3h_D3e-26489692178379Protein SCARECROW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.66120.0flower| fruit| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4848280.0AM484828.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X094931.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281699.10.0PREDICTED: uncharacterized protein LOC100262914
STRINGcassava4.1_024665m1e-138(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-68GRAS family protein