PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015265001
Common NameVIT_11s0016g02790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 365aa    MW: 41002.8 Da    PI: 8.4334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015265001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08121141526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f++ G Ck Gd+C FaHg
  GSVIVT01015265001 121 ACPDFRK-GNCKKGDSCEFAHG 141
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0868105IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5121143IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6121141IPR000571Zinc finger, CCCH-type
SMARTSM0035613151174IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.211151175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MMIGESRHPN PTVLVPPWPH FDDPTVDISF PYPVSGVSAL TALQRYLPSN DVDVDSDSDI  60
SGREADIPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY AHPGEKARRR DPRKFHYSGT  120
ACPDFRKGNC KKGDSCEFAH GVFECWLHPA RYRTQPCKDG PNCRRRVCFF AHTAEQLRVL  180
PQQSPRTPGS VESYDGSPLR QALEASCAKT LPFMSSPGLS RSLGSNSINE MVASLRQLQL  240
SKVKSAPSSW CVHMGSPAPK RHGLGFVDLF EEEPAMERVE SGRDLRAKMF EKLSKENSLD  300
RPDPSASGAG PDVGWVSELV KLMKIPISQL PTRMPRRYFT CGGFLVVCFI HIKLKILPIY  360
EQIW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.154540.0bud| cell culture| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3935530.0FQ393553.1 Vitis vinifera clone SS0AFA25YG20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283114.20.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotO821991e-123C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLF6HGX40.0F6HGX4_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-121C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]