PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01013234001 | ||||||||
Common Name | VIT_02s0012g00570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ARR-B | ||||||||
Protein Properties | Length: 558aa MW: 61827.6 Da PI: 6.1489 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.1 | 4e-28 | 316 | 370 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++ GSVIVT01013234001 316 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 370 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 32.7 | 3.8e-12 | 20 | 125 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+ dD+ + + +r+ le+ +y +v ++ + eal + k +++ ++ ++ + +++l++ + +lp i++++ +++ +++ GSVIVT01013234001 20 VLLLDDDTTSAAEIRSKLEEMDY-IVSTFCNENEALSAISSKPesFHVAIVEVSTGNNGSFKFLETAK----DLPTIMISSIHCLSTMMKCI 106 899********************.***************666666*******9999988888887643....699***************** PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 +Ga +fl Kp ++++l++ GSVIVT01013234001 107 ALGAVEFLRKPLSEDKLRN 125 ****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 3.0E-17 | 16 | 160 | No hit | No description |
SuperFamily | SSF52172 | 1.85E-17 | 16 | 133 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 7.5E-5 | 18 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 22.039 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.1E-9 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.97E-10 | 21 | 130 | No hit | No description |
PROSITE profile | PS51294 | 15.114 | 313 | 372 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 314 | 373 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.43E-18 | 315 | 373 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-25 | 316 | 370 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.9E-9 | 319 | 368 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MVCTANDLQE WKDFPKGLRV LLLDDDTTSA AEIRSKLEEM DYIVSTFCNE NEALSAISSK 60 PESFHVAIVE VSTGNNGSFK FLETAKDLPT IMISSIHCLS TMMKCIALGA VEFLRKPLSE 120 DKLRNIWQHV VHKAFNAGGS VLPESLKPVK ESVASMLQLQ MENEEPRNES SAETLNVSNV 180 HENDHMQSAG TDKYPAPSTP QLKQGGRSLD DGDCLDQTNC STEKESGEQD GESKSVETTC 240 GTSVAEVTAQ VSPPQGLGES VIKEEDDSAD GCKSESNMSP HPQNKDSLSE FGGDARNPRK 300 ASGVHSPCGT RANRKKMKVD WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVEGLTRHNV 360 ASHLQKYRMH RRHILPKEDD RRWPHQRDPM QRNYYPQKPV MAFPPYHSSH TLPAAQLYPV 420 WGQPSSHPAQ MWSTPGYHTW QPAESWIWKP YPGMNADAWG CPVMTPTHTP CSSFPQNPSG 480 FDHNNGSGIY NTGIPQSPID LYPAEELIDR VVKEAISKPW MPLPLGLKPP ATESVLAELS 540 RQGISTIPPH INTPRPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-17 | 321 | 370 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5444 | 0.0 | bud| flower| fruit| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ393611 | 0.0 | FQ393611.1 Vitis vinifera clone SS0AFA25YC03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279150.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-150 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A438JZR0 | 0.0 | A0A438JZR0_VITVI; Two-component response regulator-like APRR2 | ||||
STRING | VIT_02s0012g00570.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9166 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-152 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01013234001 |
Publications ? help Back to Top | |||
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