PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G18020.6 | ||||||||
Common Name | APRR2, PRR2, T6K21.200, TOC2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARR-B | ||||||||
Protein Properties | Length: 535aa MW: 59402.1 Da PI: 5.7245 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.7 | 8.1e-26 | 297 | 350 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH++Fv+aveqL G ++A+P++ilelmkv Lt+++v+SHLQk+R + AT4G18020.6 297 KKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVGTLTRHNVASHLQKFRQH 350 689*****************.********************************76 PP | |||||||
2 | Response_reg | 32.9 | 3.4e-12 | 39 | 133 | 14 | 109 |
HHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS Response_reg 14 lrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107 r+ le+ +y +v++++d +eal + ++ +++ ++ ++m+ + e +k ++++++ lp i++++ +++ +++ +Ga +fl Kp +pe+l AT4G18020.6 39 TRSELESMDY-IVTTFTDETEALSAVVKNPesFHIAIVEVNMSAeS---ESFKFLEAAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKL 131 5778999***.**************9666667**********9945...556666677789***********************************9 PP HH CS Response_reg 108 vk 109 + AT4G18020.6 132 KN 133 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 24.433 | 25 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 1.1E-12 | 37 | 141 | IPR011006 | CheY-like superfamily |
Pfam | PF00072 | 9.5E-9 | 37 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 7.1E-14 | 39 | 166 | No hit | No description |
CDD | cd00156 | 1.99E-8 | 43 | 138 | No hit | No description |
PROSITE profile | PS51294 | 16.667 | 293 | 352 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 294 | 352 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.36E-19 | 295 | 353 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 297 | 350 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.2E-8 | 299 | 347 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000156 | Molecular Function | phosphorelay response regulator activity | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL 60 SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM ISTDHCITTT MKCIALGAVE 120 FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP 180 STPQLKQDSR LLDGDCQENI NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV 240 VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD 300 WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH 360 NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY PPGAIPPLWP PPLQSIGQPP 420 PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE 480 MLDQVVKEAI SKPWLPLPLG LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-15 | 296 | 354 | 5 | 63 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.25394 | 0.0 | floral meristem| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 254704_at | 0.0 | ||||
Expression Atlas | AT4G18020 | - | ||||
AtGenExpress | AT4G18020 | - | ||||
ATTED-II | AT4G18020 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9). | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G18020.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G51910 | |||||
IntAct | Search Q6LA43 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G18020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF385725 | 0.0 | AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds. | |||
GenBank | AY143963 | 0.0 | AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190759.1 | 0.0 | CheY-like two-component responsive regulator family protein | ||||
Refseq | NP_001329341.1 | 0.0 | CheY-like two-component responsive regulator family protein | ||||
Refseq | NP_567548.1 | 0.0 | CheY-like two-component responsive regulator family protein | ||||
Refseq | NP_849403.1 | 0.0 | CheY-like two-component responsive regulator family protein | ||||
Refseq | NP_849404.2 | 0.0 | CheY-like two-component responsive regulator family protein | ||||
Swissprot | Q6LA43 | 0.0 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A178V225 | 0.0 | A0A178V225_ARATH; PRR2 | ||||
STRING | AT4G18020.6 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G18020.6 |
Entrez Gene | 827527 |
iHOP | AT4G18020 |
wikigenes | AT4G18020 |