PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013136001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 286aa    MW: 31286.5 Da    PI: 6.9116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013136001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-1082106126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC+ f++ GtC+y  +C+FaH+
  GSVIVT01013136001  82 FKTKLCCKFRA-GTCPYVTNCNFAHS 106
                        69*********.*************8 PP
2zf-CCCH18.82.9e-06156181126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yk + C+ f+    C+yGd+C+F H+
  GSVIVT01013136001 156 YKGRHCKKFYTDEGCPYGDNCTFLHD 181
                        77888********************7 PP
3zf-CCCH43.84.3e-14210236127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt++C+ +  tG+C++G++C+FaHg+
  GSVIVT01013136001 210 WKTRICNKWELTGYCPFGSKCHFAHGM 236
                        8************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.75E-879112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-1479114IPR000571Zinc finger, CCCH-type
SMARTSM003560.00381107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.98181108IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-782106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-9153183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-8154183IPR000571Zinc finger, CCCH-type
SMARTSM003560.11155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23155183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-17204239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-10206240IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-9209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225209237IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11210236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDNGREAGFS GSVGGGVDNW IPGSSDQLVW ATEDDYAVWN GDGSGDTPSN SNYEGRQSQS  60
NVFGRDRDLP SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIQEL RRPPPNWQEI  120
VAAHDEERGV SSEPREEFQI PSIGSSSFGV ETQRSYKGRH CKKFYTDEGC PYGDNCTFLH  180
DEQSKARESV AISLGPGAGG GGSNIKPSNW KTRICNKWEL TGYCPFGSKC HFAHGMGELH  240
RYGGGLVDES RDSTSAPPDS KQGGSLLSRI QMFTMLEFHP NGRLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4470291e-134AM447029.2 Vitis vinifera contig VV78X256157.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663412.11e-169PREDICTED: zinc finger CCCH domain-containing protein 12
RefseqXP_019080142.11e-169PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-101C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLF6HT761e-168F6HT76_VITVI; Uncharacterized protein
STRINGVIT_02s0012g01550.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-103C3H family protein