PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013053001
Common NameLOC100243644, VIT_02s0012g02250
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 414aa    MW: 43666 Da    PI: 6.9164
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013053001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.98.2e-22305367163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e++++k e+++l se+
  GSVIVT01013053001 305 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRAEVSRIKSEYEQLLSEN 367
                        89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.4E-31196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.8E-59135272No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-18298364No hitNo description
SMARTSM003383.0E-22305369IPR004827Basic-leucine zipper domain
PfamPF001701.1E-20305367IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.3307370IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-11308364No hitNo description
CDDcd147022.50E-23310360No hitNo description
PROSITE patternPS000360312327IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGSSEMDKAG KEKESKTPPT TTQEQSSTTS AGTVNPDWSG FQAYSPIPPH GFLASSPQAH  60
PYMWGVQHLM PPYGTPPHPY VAMYPPGGLY AHPSIPPGSY PFSPFAMPSP NGIAETSGTT  120
PGSMEADGKS SEGKEKLPIK RSKGSLGSLN MLTGKNNELG KTSGASANGV YSKSAESASE  180
GSSEGSDANS QSDSQLKSGC RQDSLEAETS QNGSTCHAPQ NGGPNTPHAM VNQTMAIMPI  240
SAPGAPGGVP GPTTNLNIGM DYWGAPTSST IPAMRGKVPS APVTGGIVTA GSRDSVQSQL  300
WLQDERELKR QRRKQSNRES ARRSRLRKQA ECDELAQRAD ALKEENASLR AEVSRIKSEY  360
EQLLSENASL KERLGEIPGQ DDHRTGGRNE QHLGNDTKQT GQTGQAEHGQ GGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327RRSRLRK
2321328RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.29900.0bud| cell culture| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4763941e-162AM476394.2 Vitis vinifera contig VV78X073704.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276625.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_010663002.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_010663003.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-176BZP16_ARATH; bZIP transcription factor 16
TrEMBLD7TTQ20.0D7TTQ2_VITVI; Uncharacterized protein
STRINGVIT_02s0012g02250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-157basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]