PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012187001
Common NameLOC100259545, VIT_01s0011g00790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 532aa    MW: 61245 Da    PI: 6.9052
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012187001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09475518445
                        S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                        W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  GSVIVT01012187001 475 WSAVQERALVQALKTFPKEtnqRWERVAAAVP-GKTVNQCKKKFA 518
                        ********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.8E-2180175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.5E-2193199IPR001623DnaJ domain
SMARTSM002713.3E-1496171IPR001623DnaJ domain
CDDcd062573.65E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.45697179IPR001623DnaJ domain
PfamPF002262.1E-1897176IPR001623DnaJ domain
PRINTSPR006252.0E-8102120IPR001623DnaJ domain
PRINTSPR006252.0E-8120135IPR001623DnaJ domain
PRINTSPR006252.0E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
SMARTSM007170.59376429IPR001005SANT/Myb domain
PROSITE profilePS500904.542381415IPR017877Myb-like domain
PROSITE profilePS500907.015467517IPR017877Myb-like domain
SMARTSM007172.3E-8471523IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-6471517IPR009057Homeodomain-like
SuperFamilySSF466891.48E-9473529IPR009057Homeodomain-like
CDDcd001672.36E-6475521No hitNo description
PfamPF002492.9E-7475517IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSANMSLRLI TYSEELVNGQ PIYVSSNCLP LKAFRLEPAG HAFHSAALRV LGCCEEEGED  60
EDDQNVPNDK EQSYFPSSGS YSSKGKKKSG AEGKQQDHYA LLGLSHLRFL ATEDQIRKSY  120
RETALKHHPD KQAALILAEE TEAAKQAKKD EIENHFKSIQ EAYEVLIDPV KRRIYDSTDE  180
FDDEIPTDCE PQDFFKVFGP AFMRNSRWSV NQPVPTLGEE NTPLKEVDMF YNFWYCFKSW  240
REFPHTDEFD LEQAESRDHK RWMERQNAKL SEKARKEEYV RIQERRQKEE EEKRAAEAAS  300
HQKKVKEKEK KLLRKERTRL RTLSAPVLTQ NLFNITEDDV ESLCMSLETE QLRNLCDKIE  360
GAEGLERGKL LRDARGGNTD STEEIELLRK GMQKYPKGTS RRWEVISEYI GTGRSVDEIL  420
KATKTVLLQK PDATKAFDSF LEKRKPAQSI ASPLTTREET EGVLIQNGPE KQDLWSAVQE  480
RALVQALKTF PKETNQRWER VAAAVPGKTV NQCKKKFALL KEHFRNKKNA V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1519328220109Zuotin
5dje_B2e-1519328220109Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.2570.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4805880.0AM480588.1 Vitis vinifera contig VV78X107304.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649490.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLF6HF720.0F6HF72_VITVI; Uncharacterized protein
STRINGVIT_01s0011g00790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-115DnaJ domain ;Myb-like DNA-binding domain