PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01011445001

Common Name

VIT_14s0108g01070

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 291aa MW: 32887.3 Da PI: 7.8281

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01011445001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182	1.5e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL +kv ++ + + +i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ GSVIVT01011445001 16 LPPGFRFHPTDEELITHYLSQKVLNSGFCA-VAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEI 106 79***********************888.67***********888999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ ++lvg+kktLvfykgrapkgekt+Wvmheyrle GSVIVT01011445001 107 YK-MKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-63	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.423	16	166	IPR003441	NAC domain
Pfam	PF02365	3.1E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MEKAPDQSKD DEMMELPPGF RFHPTDEELI THYLSQKVLN SGFCAVAIGE VDLNKCEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYKMK TLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKHSMYNL PKTTKNEWVI CRVFQKSSGG KKTHISGLLP 180 PLTDSSPFSS ETRTVAASSS SSNPSDISPA SLLFSKFPFP NSFHTPQNPL NLGNCQFPDS 240 FLIPDQSILR ILLENQGSDM KPSSKTESFE DQNDPSTSAG PVDIDCLWNY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-55	14	172	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-55	14	172	18	174	NAC domain-containing protein 19
3swm_B	8e-55	14	172	18	174	NAC domain-containing protein 19
3swm_C	8e-55	14	172	18	174	NAC domain-containing protein 19
3swm_D	8e-55	14	172	18	174	NAC domain-containing protein 19
3swp_A	8e-55	14	172	18	174	NAC domain-containing protein 19
3swp_B	8e-55	14	172	18	174	NAC domain-containing protein 19
3swp_C	8e-55	14	172	18	174	NAC domain-containing protein 19
3swp_D	8e-55	14	172	18	174	NAC domain-containing protein 19
4dul_A	7e-55	14	172	15	171	NAC domain-containing protein 19
4dul_B	7e-55	14	172	15	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.5417	0.0	bud\| fruit\| inflorescence

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM488283	1e-151	AM488283.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X196884.34, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283811.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-115	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	F6H5V0	0.0	F6H5V0_VITVI; Uncharacterized protein
STRING	VIT_14s0108g01070.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-113	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	GSVIVT01011445001

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]