PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01011163001

Common Name

VIT_08s0105g00370

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 244aa MW: 27331 Da PI: 9.3473

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01011163001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF eav+qLGG+++AtPk il++m v+gLt++hvkSHLQkYR+ GSVIVT01011163001 22 KERLRWTQELHDRFEEAVNQLGGADRATPKGILKAMAVPGLTIYHVKSHLQKYRI 76 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.664	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-30	20	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-18	21	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-9	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-17	108	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MPGGLGSVSA NMGSSRSDGS GKERLRWTQE LHDRFEEAVN QLGGADRATP KGILKAMAVP 60 GLTIYHVKSH LQKYRISKFV PESSSRAKFE RRSISEMLPN FSTTSGAQLK EALQMHMEVE 120 RRLSDQLEVQ KSLKLKIEAQ GRFFERIAEE QRNWVSIMKP TNLFSPTSLP SLCEESESNA 180 KESDSDSDSN KTDMQYEGFQ AKKPRLMDDH IYPPRDIISY CVLKGKKNLS ILMNAMHSSA 240 TSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	21	79	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.29279	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM449115	1e-142	AM449115.1 Vitis vinifera contig VV78X025344.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264119.2	1e-158	PREDICTED: myb family transcription factor PHL7
Swissprot	Q9SJW0	2e-52	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	D7SY15	0.0	D7SY15_VITVI; Uncharacterized protein
STRING	VIT_08s0105g00370.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-55	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01011163001