PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010631001 | ||||||||
Common Name | CBF4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19857.7 Da PI: 6.5071 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.1 | 2.4e-09 | 55 | 85 | 1 | 35 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35 + y+GVr++ +g+Wv+e+r+p +k+ r++lg+ GSVIVT01010631001 55 PVYRGVRRRN-SGKWVCEVREP---NKTSRIWLGT 85 68*****888.8******9998...336******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-5 | 55 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0059 | 56 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.864 | 56 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-13 | 56 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-7 | 56 | 85 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MNTTSPPYSD PHPLVCNWDS LNLPDSDGGS EELMLASTHP KKRAGRKKFR ETRHPVYRGV 60 RRRNSGKWVC EVREPNKTSR IWLGTGGGGG VRTPDNVFVM DEEDVFGMPG LLVNMAEGLL 120 MPPPHSVADG YGGDDMAADA DMSLWMNPIS CTEAIFLGPC NILWLNIFFI FSFLKWKI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1371 | 1e-142 | bud| flower| inflorescence| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR233295 | 0.0 | KR233295.1 Vitis vinifera C-repeat binding transcription factor (CBF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081607.1 | 1e-57 | PREDICTED: dehydration-responsive element-binding protein 1B isoform X2 | ||||
TrEMBL | A0A0P0GF67 | 1e-129 | A0A0P0GF67_VITVI; C-repeat binding transcription factor | ||||
STRING | VIT_16s0100g00380.t01 | 1e-55 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6456 | 5 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-26 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010631001 |