PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009680001 | ||||||||
Common Name | VIT_18s0001g12220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 497aa MW: 51862.5 Da PI: 9.5058 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSVIVT01009680001 57 FVCEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ GSVIVT01009680001 133 WKCERCSKKYAVQSDWKAHLKTC 155 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 56 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.4E-7 | 56 | 79 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.9E-5 | 57 | 79 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 98 | 128 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 121 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.4E-7 | 128 | 153 | No hit | No description |
SMART | SM00355 | 130 | 133 | 153 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MTVSTASREA SVTSSGNQTA PQPVAPTKKK RNLPGTPDPD AEVIALSPKT LMATNRFVCE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEVRKRVYVC PEPTCVHHDP TRALGDLTGI 120 KKHFCRKHGE KKWKCERCSK KYAVQSDWKA HLKTCGTREY KCDCGTLFSR RDSFITHRAF 180 CDALAQESAR AQVLPSTNTE ENPEIETAVS SSPTALSPST TVLSIQSPGA DMTENPVGVL 240 QQAPATISLT TGTVTSSSSS STSVFASIFA PSTTPVTSQP PQSSSTFSDL ICAMGRSKRS 300 TTLPSSSTAE PTLRLSSSLY LSNSASSLFP TPDQNHRHYA PSPQPAMSAT ALLQKAAQMG 360 AAASNASLLR GLGLAMSPSS SAQQDSSTTQ WSGHVKADSN PVGAGLGLGL PSEGGPALTG 420 LMMSPSSLFV NKPTTLDLLG LGMVPGGAST AGLSALLTSI SGGGLDIAAA GSPFGGAAAA 480 TAEAAPDRKP NGPALL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 129 | 198 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 129 | 198 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.22494 | 0.0 | bud| inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. | |||||
Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM447435 | 0.0 | AM447435.2 Vitis vinifera contig VV78X087181.7, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281605.1 | 0.0 | PREDICTED: protein indeterminate-domain 2 isoform X1 | ||||
Swissprot | Q9LVQ7 | 1e-152 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | E0CQ24 | 0.0 | E0CQ24_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g12220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-122 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009680001 |
Publications ? help Back to Top | |||
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