PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01009665001

Common Name

LOC100250676, VIT_18s0001g12120

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bZIP

Protein Properties

Length: 399aa MW: 42181.2 Da PI: 6.1892

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01009665001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	76.2	4.3e-24	272	334	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+ kv+ L++eN+ L++el +l ++++kl+se+ GSVIVT01009665001 272 ERELKRQRRKQSNRESARRSRLRKQAECEELQSKVEILSNENHVLREELHRLAEQCEKLTSEN 334 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.8E-30	1	94	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	6.3E-9	119	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-19	266	331	No hit	No description
SMART	SM00338	1.2E-21	272	336	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-21	272	334	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.139	274	337	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-11	275	331	No hit	No description
CDD	cd14702	1.99E-24	277	327	No hit	No description
PROSITE pattern	PS00036	0	279	294	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0090342	Biological Process	regulation of cell aging
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGDGEESTPP KSSKPPASTQ ETPSTPSYPD WSTSMQAYYG AGATPPPFFP SPVAPPSPHP 60 YLWGGQHPMM PPYGTPLPYP ALYPRGALYA HPSMATAQGV ALTNTDMEVK TPDGKDPASI 120 KKSKAASGNM GLISGKSGES GKAASVSGND GASQSGESGS EASSDATDEN ANQASSAVKK 180 RSFNLADGSN AKGNSAAQYT GGNHSASVPG KPVVPMPTTS LNIGMDLWNA SPAGGTPMKT 240 RPQSSGASPQ VASATIVGRE GMLQDHQWIQ DERELKRQRR KQSNRESARR SRLRKQAECE 300 ELQSKVEILS NENHVLREEL HRLAEQCEKL TSENNSIMEE LTQLYGPEAT SSLQDNNHNL 360 VLHPINGEDD GHVQDASPLN NSSSTSDQNG KFSSNGKI*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGDGEESTPP KSSKPPASTQ ETPSTPSYPD WSTSMQAYYG AGATPPPFFP SPVAPPSPHP  60
YLWGGQHPMM PPYGTPLPYP ALYPRGALYA HPSMATAQGV ALTNTDMEVK TPDGKDPASI  120
KKSKAASGNM GLISGKSGES GKAASVSGND GASQSGESGS EASSDATDEN ANQASSAVKK  180
RSFNLADGSN AKGNSAAQYT GGNHSASVPG KPVVPMPTTS LNIGMDLWNA SPAGGTPMKT  240
RPQSSGASPQ VASATIVGRE GMLQDHQWIQ DERELKRQRR KQSNRESARR SRLRKQAECE  300
ELQSKVEILS NENHVLREEL HRLAEQCEKL TSENNSIMEE LTQLYGPEAT SSLQDNNHNL  360
VLHPINGEDD GHVQDASPLN NSSSTSDQNG KFSSNGKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	294	RRSRLRK
2	288	295	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.9877	0.0	fruit\| inflorescence\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in both light and dark grown leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ380415	0.0	FQ380415.1 Vitis vinifera clone SS0ACG61YO10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283244.1	0.0	PREDICTED: G-box-binding factor 1
Refseq	XP_010664662.1	0.0	PREDICTED: G-box-binding factor 1
Refseq	XP_019072177.1	0.0	PREDICTED: G-box-binding factor 1
Swissprot	P42774	1e-104	GBF1_ARATH; G-box-binding factor 1
TrEMBL	E0CQ14	0.0	E0CQ14_VITVI; Uncharacterized protein
STRING	VIT_18s0001g12120.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP700	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	2e-74	G-box binding factor 1

Link Out ? help Back to Top
Phytozome	GSVIVT01009665001
Entrez Gene	100250676

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]