PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008901001
Common NameLOC100250491, VIT_18s0001g03310
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 483aa    MW: 53161.9 Da    PI: 6.171
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008901001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.51e-991034741366
               GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfse 86 
                        lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l +   +++    + +++++++  +s++laa++l+++
  GSVIVT01008901001 103 LVHLLMAAAEALTGVNKSrdLARVILVRLKELVSPTDgTNMERLAAYFTDALQGLLEGaGAKHMIGNGHHRDDHHHHhhQSDVLAAFQLLQD 194
                        68***********96665559***********9987769******************955556666666666555546799*********** PP

               GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgv 174
                        +sP++kf+h+taNqaIleav++e+r+Hi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++   g  s  +++etg+rL+ fA+++g 
  GSVIVT01008901001 195 MSPYVKFGHFTANQAILEAVSKERRIHIVDYDIMEGIQWASLMQALVSRKDGPPapHLRITALSRGGGGrrSIGTIQETGRRLTAFAASIGQ 286
                        **************************************************776555*********665598999****************** PP

               GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyys 265
                        pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +  ++     ++L+  k+l+Pk+v++ve+e+   +++ F+ rf+++l++ys
  GSVIVT01008901001 287 PFSFHQCRLDSDETFRPSALKLVRGEALIINCMLHLPHFSYRAPDSV---ASFLSGGKTLKPKLVTLVEEEVGPtGDGGFVGRFMDSLHHYS 375
                        ******9999****************************985555555...59*******************9987***************** PP

               GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sg 356
                        a++dslea++p + ++r+ vEr++lg++i   +    + r  ++   ++W e+l+ aGF+ v +s  + +qaklll  ++ dgyrvee  ++
  GSVIVT01008901001 376 AVYDSLEAGFPMQGRARALVERVFLGPRIAGTLGRIYRGRGGQE--GGSWGEWLDGAGFRGVGISFANHCQAKLLLGLFN-DGYRVEELaNN 464
                        ***********************************999966554..59********************************.******97588 PP

               GRAS 357 slvlgWkdrp 366
                         +vlgWk+r+
  GSVIVT01008901001 465 RMVLGWKSRR 474
                        899****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.89977462IPR005202Transcription factor GRAS
PfamPF035143.5E-97103474IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAMALDNTVD LEFSGYSTTT TTTATTATDR DDHYCNWDDW SPVVDWDALS GEQDDFRDLI  60
ESMMDDSGLN PVRAVEEGCN SASTDTMITD EENNGPDLKG LRLVHLLMAA AEALTGVNKS  120
RDLARVILVR LKELVSPTDG TNMERLAAYF TDALQGLLEG AGAKHMIGNG HHRDDHHHHH  180
HQSDVLAAFQ LLQDMSPYVK FGHFTANQAI LEAVSKERRI HIVDYDIMEG IQWASLMQAL  240
VSRKDGPPAP HLRITALSRG GGGRRSIGTI QETGRRLTAF AASIGQPFSF HQCRLDSDET  300
FRPSALKLVR GEALIINCML HLPHFSYRAP DSVASFLSGG KTLKPKLVTL VEEEVGPTGD  360
GGFVGRFMDS LHHYSAVYDS LEAGFPMQGR ARALVERVFL GPRIAGTLGR IYRGRGGQEG  420
GSWGEWLDGA GFRGVGISFA NHCQAKLLLG LFNDGYRVEE LANNRMVLGW KSRRSTYCWW  480
EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5311147126367Protein SCARECROW
5b3h_D3e-5311147126367Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4702230.0AM470223.2 Vitis vinifera contig VV78X272540.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284426.20.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLF6H0T40.0F6H0T4_VITVI; Uncharacterized protein
STRINGVIT_18s0001g03310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-164GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]