PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008601001
Common NameLOC100252516, VIT_17s0000g00770
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 210aa    MW: 23960.8 Da    PI: 8.0627
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008601001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.42.1e-47141381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lp GfrF+Ptdeelv +yLk kv +++l++ ++i+e+++ k++PwdLp      e+e yfFs+++ ky+ g+r+nrat+sgyWka+g+dk++
  GSVIVT01008601001  14 LPLGFRFQPTDEELVFQYLKCKVFSRPLPA-SIIPEINVSKYDPWDLPGD---LEQEKYFFSNKEAKYQIGNRSNRATSSGYWKASGTDKQI 101
                        699***************************.89***************54...46799********************************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+ +++lvg+kktLvfy+g+ p  ++tdWvmheyrl
  GSVIVT01008601001 102 TSSrNSQLVGMKKTLVFYRGKPPYDSRTDWVMHEYRL 138
                        *9868888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5310168IPR003441NAC domain
PROSITE profilePS5100553.87714168IPR003441NAC domain
PfamPF023654.5E-2615138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEKFNFVRDG VIRLPLGFRF QPTDEELVFQ YLKCKVFSRP LPASIIPEIN VSKYDPWDLP  60
GDLEQEKYFF SNKEAKYQIG NRSNRATSSG YWKASGTDKQ ITSSRNSQLV GMKKTLVFYR  120
GKPPYDSRTD WVMHEYRLLI AGAPQTKNTP SSSSIQMEDW VLCRVFLKRR TGAEHHEATE  180
SCSSGITEIS SSESDHEESS STAGYNFFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-441216915166NO APICAL MERISTEM PROTEIN
1ut4_B1e-441216915166NO APICAL MERISTEM PROTEIN
1ut7_A1e-441216915166NO APICAL MERISTEM PROTEIN
1ut7_B1e-441216915166NO APICAL MERISTEM PROTEIN
4dul_A1e-441216915166NAC domain-containing protein 19
4dul_B1e-441216915166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4891701e-140AM489170.2 Vitis vinifera contig VV78X027678.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663782.11e-157PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY937e-77NAC83_ARATH; NAC domain-containing protein 83
TrEMBLD7SH381e-156D7SH38_VITVI; Uncharacterized protein
STRINGVIT_17s0000g00770.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-78NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]