PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008560001 | ||||||||
Common Name | VIT_17s0000g01230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26794.7 Da PI: 10.4179 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.5 | 7.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskR+ng+lKKA+ELS+LCdaeva++ifs++gk y ++s GSVIVT01008560001 9 KRIENSTSRQVTFSKRKNGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 82.1 | 1.3e-27 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ e + e+++L++ i++L+ +++hl GedL++L +keL+qLe+qL++++++iR+kK +++ e+i+ l+k++++lqe+n++L+kk++ GSVIVT01008560001 82 QRSRTIEFWMSEIDNLRRTIDTLEAKHKHLAGEDLSTLGMKELKQLERQLKNGVERIRAKKRRIISEHISLLKKRQRALQEDNTRLQKKVK 172 56778899********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.015 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-32 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.36E-39 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 6.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.9E-24 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.277 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRGKVELKR IENSTSRQVT FSKRKNGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH 60 DMDRSIARYR NEVGLMEFNN YQRSRTIEFW MSEIDNLRRT IDTLEAKHKH LAGEDLSTLG 120 MKELKQLERQ LKNGVERIRA KKRRIISEHI SLLKKRQRAL QEDNTRLQKK VKLHEANLNT 180 RAFGAEECDA FGRAVAAVVL AVHMTGPGYE KDGQMGSKSH HQTARMLADQ DGGDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-23 | 1 | 86 | 1 | 80 | MEF2C |
5f28_B | 1e-23 | 1 | 86 | 1 | 80 | MEF2C |
5f28_C | 1e-23 | 1 | 86 | 1 | 80 | MEF2C |
5f28_D | 1e-23 | 1 | 86 | 1 | 80 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.8468 | 0.0 | cell culture| inflorescence| pedicel| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM485301 | 2e-96 | AM485301.2 Vitis vinifera contig VV78X211751.53, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081901.1 | 1e-139 | PREDICTED: MADS-box transcription factor 23 isoform X2 | ||||
TrEMBL | D7SH01 | 1e-173 | D7SH01_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g01230.t01 | 1e-174 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 6e-50 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008560001 |