PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008424001
Common NameVITISV_030358
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WOX
Protein Properties Length: 348aa    MW: 39486 Da    PI: 7.6905
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008424001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.25e-2277136357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  GSVIVT01008424001  77 SRWNPTPEQLRTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 136
                        7*****************99**************************************97 PP
2Wus_type_Homeobox115.23.2e-3776138365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  GSVIVT01008424001  76 SSRWNPTPEQLRTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 138
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.1E-574141IPR001356Homeobox domain
PfamPF000469.8E-2077136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-977136IPR009057Homeodomain-like
SuperFamilySSF466892.74E-1277141IPR009057Homeodomain-like
CDDcd000864.73E-678138No hitNo description
PROSITE profilePS5007111.20882137IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MWMMGYNDGG ELNMPDSFNG RKLRPLIPRP ATSTSGTATT TSSCLSRIHG TDLFGLNHHL  60
EQSNIREFNT TPVIVSSRWN PTPEQLRTLE ELYRRGTRTP SAEQIQHITA QLRRYGKIEG  120
KNVFYWFQNH KARERQKRRR QLEPDEQNRD VESTERKESG GSRTGFEEQT KNWALSTNCS  180
ILAEESLSIQ RAAKATAAAA ECRTDGWIQF DEGELQHRRS LVERNAIWQM MQLSCPSPTT  240
HLINTTTTTR TKEAAAVRRM DPKFIKTRDL NIFIAPYRSE GHNHLAGVGA DHSNEEEGGE  300
SQTLQLFPLR SGDGNENINE KEGEISVAAM NTNLTPHQFF EFLPLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4398470.0AM439847.2 Vitis vinifera contig VV78X220001.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663679.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA5AY440.0A5AY44_VITVI; Uncharacterized protein
STRINGVIT_17s0000g02460.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-60WUSCHEL related homeobox 1