PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008140001 | ||||||||
Common Name | LOC100257072, VIT_17s0000g04990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28065.8 Da PI: 8.7634 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.2 | 3.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeys+ GSVIVT01008140001 9 KRIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 95.7 | 7.2e-32 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++s+ +++ + + s++ e+akLk+++e Lq++qR+++GedL+sLslkeLq+LeqqL++slk+ R++Kn+l++e+++el kk k+lqee+ GSVIVT01008140001 76 AQSQLIATDLESQGSWTLEYAKLKARMEVLQKSQRNFMGEDLDSLSLKELQNLEQQLDNSLKSTRTRKNQLMYESLSELHKKGKALQEEHDL 167 566666667777899***************************************************************************** PP K-box 94 Lrkklee 100 L++k++e GSVIVT01008140001 168 LTAKVQE 174 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.955 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.46E-42 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 9.94E-34 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.3E-27 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.57 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVQLKR IENKVNRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTD 60 SCMERILERY ERYAYAQSQL IATDLESQGS WTLEYAKLKA RMEVLQKSQR NFMGEDLDSL 120 SLKELQNLEQ QLDNSLKSTR TRKNQLMYES LSELHKKGKA LQEEHDLLTA KVQEKEKEQA 180 EQAQWNQQNQ DLDSPSFLLQ QPLHALNISG NCLARDSGDD QGIPPQNRTN TPLPAWMLRH 240 VNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-21 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 1e-21 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 1e-21 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 1e-21 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.19667 | 0.0 | inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM444398 | 4e-97 | AM444398.2 Vitis vinifera contig VV78X151589.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263017.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-111 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | D7SIM8 | 1e-179 | D7SIM8_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g04990.t01 | 1e-180 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-95 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008140001 |
Entrez Gene | 100257072 |
Publications ? help Back to Top | |||
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