PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008109001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TCP | ||||||||
Protein Properties | Length: 218aa MW: 24737.4 Da PI: 9.719 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.1 | 5.8e-29 | 110 | 177 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k++i++l+ ++ ++ GSVIVT01008109001 110 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKHEIDKLPPLQIPQG 177 79***********************************************************9944443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.2E-27 | 111 | 174 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.021 | 111 | 169 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSQCSSSLTS YKYNNPALVL FLLFHTLLLF QHSGYLGVGR CLKVSPGFDS LQLNDDHERS 60 KMIPNSRERD FQAKLEDATI EGKFSKAPSS SRQWSAFRNP RIVRVSRSFG GKDRHSKVCT 120 VRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLD ATKHEIDKLP PLQIPQGNLG 180 QFHQSMLVSH ELDQNTIFCK GGVICREVVN WQCYMIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 116 | 170 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 116 | 170 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM433706 | 0.0 | AM433706.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X128180.7, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010663449.1 | 2e-89 | PREDICTED: transcription factor TCP5 | ||||
Refseq | XP_019082201.1 | 2e-89 | PREDICTED: transcription factor TCP5 | ||||
Refseq | XP_019082202.1 | 2e-89 | PREDICTED: transcription factor TCP5 | ||||
TrEMBL | A0A438I3C8 | 4e-88 | A0A438I3C8_VITVI; Transcription factor TCP5 | ||||
STRING | XP_002514641.1 | 7e-67 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-49 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008109001 |