PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01008080001 | ||||||||
Common Name | LOC100262064, VIT_17s0000g05490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 302aa MW: 33068.9 Da PI: 5.4662 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.4e-38 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC+++C+lapyfp +qpk fa +h+lFG+sn+lk+lk+l+++++ +am+s++y+A +r r Pv+G++g+i +l+ q++q++ GSVIVT01008080001 10 ACAACKYQRRKCSSECPLAPYFPPDQPKMFADAHRLFGVSNILKILKQLDPTQKLTAMQSIIYQATIRERYPVSGCLGLICQLHYQIRQTED 101 7******************************************************************************************* PP DUF260 93 elallkee 100 el+++ ++ GSVIVT01008080001 102 ELHVVLSQ 109 **987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.953 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0007016 | developmental stage | whole plant flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MTLKGGTSQA CAACKYQRRK CSSECPLAPY FPPDQPKMFA DAHRLFGVSN ILKILKQLDP 60 TQKLTAMQSI IYQATIRERY PVSGCLGLIC QLHYQIRQTE DELHVVLSQL EICRQHHHQQ 120 IQMASAPSDS SSSPLELGCS ALSLHHNPPP PPPEYNAVSV AGGGDGGLPV GVGTHHPYSP 180 TTNAPFNFDF LDPKDNSLNP VWPQNSFSIT NNNDVHNSLT IQPQPVATQP LPLQPQAAQD 240 YDEIHPFFDT FDDRQSYVDS KEAYESSSES SFKDATQSTD NVAENELKSA AACFSLISLG 300 Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-26 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-26 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM432127 | 0.0 | AM432127.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X012423.11, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010663422.1 | 0.0 | PREDICTED: LOB domain-containing protein 27 | ||||
TrEMBL | A0A438I351 | 0.0 | A0A438I351_VITVI; LOB domain-containing protein 27 | ||||
TrEMBL | D7SII0 | 0.0 | D7SII0_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g05490.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 7e-48 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01008080001 |
Entrez Gene | 100262064 |