PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01008005001
Common NameVIT_17s0000g06190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 270aa    MW: 30168.6 Da    PI: 5.4414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01008005001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  GSVIVT01008005001 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding507e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSVIVT01008005001  67 RGNFTDQEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.373961IPR017930Myb domain
SuperFamilySSF466893.08E-3011108IPR009057Homeodomain-like
SMARTSM007175.3E-141363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001674.68E-111661No hitNo description
PROSITE profilePS5129424.24462116IPR017930Myb domain
SMARTSM007173.8E-1566114IPR001005SANT/Myb domain
PfamPF002495.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2569117IPR009057Homeodomain-like
CDDcd001671.08E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTSTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFP  120
TDTSSSLPDL KSSNGYNPNT RPVQASTYAS SAENIAKLLE GWMRNSPKST RTNSEATQNS  180
KNSSEGATTP DALDSLFSFN SSNSDLSLSN DETANFTPET ILFQDESKPN LETQVPLTMI  240
EKWLFDEGAA TQEQEDLIDM SLEDTAQLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-251411627128MYB TRANSFORMING PROTEIN
1mse_C1e-25141164105C-Myb DNA-Binding Domain
1msf_C1e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.107330.0bud| cell culture| fruit| inflorescence| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4879030.0AM487903.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X257196.22, clone ENTAV 115.
GenBankEF0719840.0EF071984.1 Vitis vinifera R2R3 Myb30 transcription factor (MYB30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267946.11e-179R2R3 Myb30 transcription factor
SwissprotP813921e-107MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A438BM431e-178A0A438BM43_VITVI; Myb-related protein 306
TrEMBLF6GT801e-178F6GT80_VITVI; Uncharacterized protein
STRINGVIT_17s0000g06190.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-95myb domain protein 60
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]