PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007927001
Common NameVIT_17s0000g06820
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 352aa    MW: 38525.4 Da    PI: 10.0241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007927001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003269291123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C k+Fs+   L  H r+H
  GSVIVT01007927001 269 HECPICLKVFSSGQALGGHKRSH 291
                        79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-81941No hitNo description
SMARTSM003550.21941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0581941IPR007087Zinc finger, C2H2
PfamPF139121.8E-61942IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SuperFamilySSF576674.17E-8264291No hitNo description
SMARTSM003550.084269291IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-12269291IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411269291IPR007087Zinc finger, C2H2
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDFSSPNQKQ GHELVEFKHV CKFCKKSFPC GRSLGGHMRS HMINSSFETD EKLSKTKLSS  60
LHKAATNPDS WTSANQKLVM DSQSDTETAV PNRKKRSRRR TRYMATATSS SFSFANASSS  120
VSEIEQEQEE VAISLMMLSR DSGNWGGLNS VVKLKKLIKD EKFNPSALDS EDFQFYCKQS  180
EFGASGNSRN DSKLNKSEVL ETNKSNKLKV NCSKKTTNND ELATKRSKLT KPCNNHSPSR  240
SPGPIHGHTA SASAVKAETI LGSKKSKGHE CPICLKVFSS GQALGGHKRS HLVGGSDTRG  300
SQTIVIPKPL PEIRDLLDLN LPAPAEEEGG FKAWWVGSSH KHEPLVGMIS N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.254700.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4482310.0AM448231.2 Vitis vinifera contig VV78X220370.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281438.21e-147PREDICTED: zinc finger protein ZAT4
TrEMBLD7SI530.0D7SI53_VITVI; Uncharacterized protein
STRINGVIT_17s0000g06820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-19C2H2-like zinc finger protein