PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007772001
Common NameLOC100253569, VIT_17s0000g08150
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 179aa    MW: 20178.5 Da    PI: 9.9624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007772001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-121464655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       +  Er+RR +++s  ++L +l+P+ ++k+++  ls  + Le+A +YIk+L+
  GSVIVT01007772001 14 KTTERNRRIHMKSLCFKLSSLIPPnQFKTSKDMLSQQDQLEQAANYIKQLK 64
                       568*********************888999999****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.105863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-101376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-101478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00191469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-91563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-61768No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTKMNGPPLK PDRKTTERNR RIHMKSLCFK LSSLIPPNQF KTSKDMLSQQ DQLEQAANYI  60
KQLKERIEEL KGRKELATRV AGTNNNLIDA VMIGLRLPVI DLRDLGSSLE VMLISGLNKN  120
FMLYEVISVL EEEGAEVVSA SVSTVGDKVF HSLHAQVKIS RVGVETSRVW QRLQELIY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4672380.0AM467238.2 Vitis vinifera contig VV78X066099.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279841.11e-129PREDICTED: uncharacterized protein LOC100253569 isoform X1
TrEMBLD7SHT71e-128D7SHT7_VITVI; Uncharacterized protein
STRINGVIT_17s0000g08150.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-20bHLH family protein