PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007532001
Common NameLOC100263271, VIT_17s0000g10300
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 492aa    MW: 54715.2 Da    PI: 7.1631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007532001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.28.4e-431473301181
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetsekn.sseelaalklfsevsPi 90 
                        lv+lL++cAeav+ +d++ a++lL++l+ +a   g+++qR+a++f+++La rl+  ++ + +  ++ps ++ ++  +++  al+l +e++P 
  GSVIVT01007532001 147 LVQLLIACAEAVACRDKTHASSLLSELRANALVFGSSFQRVASCFVQGLADRLSLVQPlGAVGFIAPSINPLDTaWEKKEEALRLVYEICPH 238
                        689**************************************************984431444444444433333377888999********* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                        +kf+h++aN  Ilea+ege+  H++D++++    +G QW  L+++La+R++ pp +lRiTgvg       ++ + +ge L+ +A+ l+++++
  GSVIVT01007532001 239 IKFGHFVANASILEAFEGENFAHVVDLGMTlglaHGQQWRQLIHSLANRAGRPPrRLRITGVGL----CVDRFKIIGEELEAYAQDLDINLD 326
                        **************************98652233889*************777769********....**********************99 PP

               GRAS 178 fnvl 181
                        +  l
  GSVIVT01007532001 327 ILQL 330
                        8765 PP
2GRAS183.41.6e-56328490208374
               GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                        lqlh +++es    +   +vL+ +++lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdslea lp+ +  r+k+E++++g+ei+n+v+
  GSVIVT01007532001 328 LQLHCVVKESRGALN---SVLQKINELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLEAMLPKYDTRRAKIEQFYFGEEIKNIVS 416
                        678888766665555...8************************************************************************* PP

               GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qak  l kvk  +gy++ ee+g+lvlgWk++p+v++S+W+
  GSVIVT01007532001 417 CEGPARVERHERVDQWRRRMSRAGFQAAPIK--MMAQAKQWLGKVKaCEGYNIMEEKGCLVLGWKSKPIVAASCWK 490
                        *****************************96..789***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.121121471IPR005202Transcription factor GRAS
PfamPF035145.5E-54328490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MASDLLSEER SDEVSGLDTS LSAQAYYSRS YLPIFQNGSA TNWFHYSDEA RNHKRLKRTQ  60
SIAESIGSNS SLYSGGKSYS NSSSSFINRS SSTNSLNSLP RLHFRDHIWT YTQRYLAAEA  120
VEEAAAAMIS AAEGEVEEDG SGDGMRLVQL LIACAEAVAC RDKTHASSLL SELRANALVF  180
GSSFQRVASC FVQGLADRLS LVQPLGAVGF IAPSINPLDT AWEKKEEALR LVYEICPHIK  240
FGHFVANASI LEAFEGENFA HVVDLGMTLG LAHGQQWRQL IHSLANRAGR PPRRLRITGV  300
GLCVDRFKII GEELEAYAQD LDINLDILQL HCVVKESRGA LNSVLQKINE LSPKVLVLVE  360
QDSSHNGPFF LGRFMEALHY YSAIFDSLEA MLPKYDTRRA KIEQFYFGEE IKNIVSCEGP  420
ARVERHERVD QWRRRMSRAG FQAAPIKMMA QAKQWLGKVK ACEGYNIMEE KGCLVLGWKS  480
KPIVAASCWK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5415448926378Protein SCARECROW
5b3h_A3e-5415448925377Protein SCARECROW
5b3h_D3e-5415448925377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4892520.0AM489252.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X112781.14, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263040.10.0PREDICTED: DELLA protein GAI
TrEMBLF6GSG20.0F6GSG2_VITVI; Uncharacterized protein
STRINGVIT_17s0000g10300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-70GRAS family protein