PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007117001
Common NameVIT_00s0479g00020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 152aa    MW: 17333.6 Da    PI: 6.8075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007117001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.6e-12960255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                       r+  + +Er+RR++++s +++L +l+P++   +s+   +  + L +A +YIk Lq
  GSVIVT01007117001  9 RTDRKTIERNRRNHMKSLYSKLNSLVPHQ---TSREaITLPDQLDEAANYIKRLQ 60
                       778899**********************8...66666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-13474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-7564No hitNo description
PROSITE profilePS5088810.652759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-8960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-13973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-41365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0050832Biological Processdefense response to fungus
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MESNPSSSRT DRKTIERNRR NHMKSLYSKL NSLVPHQTSR EAITLPDQLD EAANYIKRLQ  60
EKLEKMKERK DNLMGFERPN TSPNSGAMVG LKPPQIDIHE KGSALEVVLI TGLDFQFMFN  120
ETIRVLHEEG AEIVNASFSV VDDTVFHTIH AQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4776670.0AM477667.1 Vitis vinifera contig VV78X047803.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635365.21e-110PREDICTED: transcription factor bHLH36
SwissprotF4JIJ71e-46BH162_ARATH; Transcription factor bHLH162
TrEMBLD7TRW21e-109D7TRW2_VITVI; Uncharacterized protein (Fragment)
STRINGVIT_00s0479g00020.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-49bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]