PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01004323001
Common NameLOC100240825, VIT_07s0197g00020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 223aa    MW: 24352.7 Da    PI: 7.7844
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01004323001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.11.5e-4371061100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q+++
  GSVIVT01004323001   7 PCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQN 98 
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +l ++k+e
  GSVIVT01004323001  99 DLFTAKKE 106
                        *9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.4176107IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-437104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSSSNSPCAA CKLLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVSK LLNELNAAHR  60
EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQNDL FTAKKELSAY IGPSAMLPIP  120
QPAGCLPQQH MSNPCSSSQI PYNTPPMLGL PTGPTHGRQL VIREPHQTQQ FNSGFDAGGT  180
VGASSFNQMT AAISPSLALG PFDNSYQLEE QQQELHRPQM LLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4931107114LOB family transfactor Ramosa2.1
5ly0_B7e-4931107114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.294740.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}.
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4362051e-177AM436205.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X267929.16, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635533.21e-153PREDICTED: LOB domain-containing protein 36, partial
SwissprotQ9FKZ37e-72LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A438FB371e-152A0A438FB37_VITVI; LOB domain-containing protein 36
STRINGVIT_07s0197g00020.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-70ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]