PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003864001
Common NameLOC100242400, VIT_00s0211g00180
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25842.7 Da    PI: 9.6878
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003864001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.44e-281059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       ri+n++ rqvtfskRr+g+lKKA+EL +LCdaev +iifsstgklye++s
  GSVIVT01003864001 10 RIDNSTSRQVTFSKRRKGLLKKAKELAILCDAEVGLIIFSSTGKLYEFAS 59
                       8***********************************************86 PP
2K-box86.26.5e-2978170898
              K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        +  + +++ + +q+e+a L+++++nLq+++R+l+Ge+L  Ls+k+Lq+Le+qLe sl+ +  kK+++l+++ieel++k + +q+en +L+kk
  GSVIVT01003864001  78 QllNPASEVKFWQREAAILRQQLQNLQENHRQLMGEELYGLSVKDLQNLENQLEMSLRGVHMKKEQILTNEIEELKQKGNLVQQENVELHKK 169
                        245678899**********************************************************************************9 PP

              K-box  98 l 98 
                        +
  GSVIVT01003864001 170 M 170
                        7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.758161IPR002100Transcription factor, MADS-box
CDDcd002653.40E-44278No hitNo description
SuperFamilySSF554552.88E-33290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.66286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIRR IDNSTSRQVT FSKRRKGLLK KAKELAILCD AEVGLIIFSS TGKLYEFAST  60
SMKSAIDRYH KSKEENHQLL NPASEVKFWQ REAAILRQQL QNLQENHRQL MGEELYGLSV  120
KDLQNLENQL EMSLRGVHMK KEQILTNEIE ELKQKGNLVQ QENVELHKKM TLIRQENMEL  180
YKKVYSTRDV TAASTNAIIP YGFSIGEDSA VPIHLELSQP KQRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21174174MEF2C
5f28_B3e-21174174MEF2C
5f28_C3e-21174174MEF2C
5f28_D3e-21174174MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4311014e-94AM431101.2 Vitis vinifera contig VV78X052696.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273556.21e-165PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ6EP491e-106MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLD7T5C51e-164D7T5C5_VITVI; Uncharacterized protein
STRINGVIT_00s0211g00180.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-105AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]