PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01003861001 | ||||||||
Common Name | LOC100242400, VIT_00s0211g00180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25887.8 Da PI: 9.8282 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.6e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g+lKKA+EL +LCdaev +iifsstgklye++s GSVIVT01003861001 10 RIDNTTSRQVTFSKRRKGLLKKAKELAILCDAEVGLIIFSSTGKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 90 | 4.4e-30 | 78 | 170 | 8 | 98 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + +++ + +q+e+a L+++++nLq+++R+l+Ge+L Ls+k+Lq+Le+qLe sl+ +R kK+++l+++ieel++k + +q+en +L+kk GSVIVT01003861001 78 QllNPASEVKFWQREAAILRQQLQNLQENHRQLMGEELYGLSVKDLQNLENQLEMSLRGVRMKKEQILTNEIEELKQKGNLVQQENVELHKK 169 245678899**********************************************************************************9 PP K-box 98 l 98 + GSVIVT01003861001 170 M 170 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.716 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.28E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.8E-27 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.077 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRGKIEIRR IDNTTSRQVT FSKRRKGLLK KAKELAILCD AEVGLIIFSS TGKLYEFAST 60 SIKSAIDRYH KSKEENHQLL NPASEVKFWQ REAAILRQQL QNLQENHRQL MGEELYGLSV 120 KDLQNLENQL EMSLRGVRMK KEQILTNEIE ELKQKGNLVQ QENVELHKKM TLIRQENMEL 180 YKKVYSTRDV TAASTNTIIP YGFSIGEDSA VPIHLELSQP KQRC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM431101 | 4e-94 | AM431101.2 Vitis vinifera contig VV78X052696.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010646399.1 | 1e-165 | PREDICTED: MADS-box transcription factor 23 | ||||
Swissprot | Q6EP49 | 1e-106 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | D7T5C5 | 1e-161 | D7T5C5_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0211g00180.t01 | 1e-161 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-105 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01003861001 |
Entrez Gene | 100242400 |
Publications ? help Back to Top | |||
---|---|---|---|
|