PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01003548001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

LBD

Protein Properties

Length: 221aa MW: 23965.8 Da PI: 9.1147

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01003548001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.3	2.3e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+ r+kC+++Cvlapyfp +qp+kf nvhk+FGasnv+kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q+++ GSVIVT01003548001 7 PCAACKIRRQKCTQECVLAPYFPPDQPQKFVNVHKVFGASNVTKLLNELNAANREDAVNSLAYEAEARLRDPVYGCVGLISVLQQRLKQVQS 98 7******************************************************************************************* PP DUF260 93 elallkee 100 +l ++k+e GSVIVT01003548001 99 DLLAAKKE 106 *9998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.115	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-41	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSSSNSPCAA CKIRRQKCTQ ECVLAPYFPP DQPQKFVNVH KVFGASNVTK LLNELNAANR 60 EDAVNSLAYE AEARLRDPVY GCVGLISVLQ QRLKQVQSDL LAAKKELAAY IGPSAMLPFI 120 QHVETATRAS ASAPAAASDP KTTSTAATTV TSTAARSWKR GGQKRGPLLL NLAAHSFNNL 180 SFMGIFTLCV SYLWLMLVHM KVSECLILAF LNCYNAMLHE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	3	110	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM484635	0.0	AM484635.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X152740.2, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019076448.1	4e-87	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-64	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	F6H7R0	1e-85	F6H7R0_VITVI; Uncharacterized protein
STRING	VIT_07s0197g00040.t01	2e-86	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-66	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	GSVIVT01003548001

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]