PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01003546001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

LBD

Protein Properties

Length: 309aa MW: 34239.7 Da PI: 7.4683

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01003546001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.1	3e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q+++ GSVIVT01003546001 7 PCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQN 98 7******************************************************************************************* PP DUF260 93 elallkee 100 +l ++k+e GSVIVT01003546001 99 DLFTAKKE 106 *9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.417	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSSSNSPCAA CKLLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVSK LLNELNAAHR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQNDL FTAKKELSAY IGPSAMLPIP 120 QPAGCLPQQH MSNPCSSSQI PYNTPPMLGL ATGPTHGRQL VIREPHQTQQ YQHQQQILEA 180 QQIAEAVAAR EQQEMLRTYE QQRQQQQLLV RFNSGFDAGG TVGASSFNQM TAAISPSLAL 240 GPFDNSYQLE EQQQELHRPQ MLLSTQTQPQ QQQPQLPQQQ QGLEARRVGA GAYIFEVLQL 300 NLSTIFPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	3	110	7	114	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM486619	0.0	AM486619.2 Vitis vinifera contig VV78X034279.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263109.3	1e-179	PREDICTED: LOB domain-containing protein 36
Refseq	XP_019076449.1	1e-179	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	6e-78	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	F6H7Q8	0.0	F6H7Q8_VITVI; Uncharacterized protein
STRING	VIT_07s0197g00020.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-71	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	GSVIVT01003546001

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]